June 2025 Goals

June 2025 goals and daily notebook entries.

Goals

Writing and manuscripts

AST manuscript writing - results for mRNA-miRNA interactions (use 3’UTR or mRNA as miRNA binding site?)
CBASS paper
Mcap 2023 writing - methods and results for polyA v ribofree

Sample processing

ENCORE library prep
Train undergrads on airbrushing
Carbs for Mcap and Fungia larvae

Data analysis

AHHHHHHH

Field work / travel

Help Zoe with her experiment
Epimar and CBASS TERs

Daily log

20250601

Nothing

20250602

Pick up gear at giant stride
Random emails

20250603

Random typing and emails
Therapy

20250604 - 20250606

In New Hampshire

20250607

Nothing

20250608

Agenda for Katie meeting
Resubmitted dissertation with minor reviews

20250609

Lab meeting
e5 results writing for mRNAs + coding
Katie meeting
TER for epimar

20250610

Dentist
e5 coding for mRNA expressed genes GO enrichment
Therapy
Emma meeting

20250611

Library prep for Flo samples

20250612

Zoe help in aquarium room
smRNA meeting
CBASS paper writing
Coral aging code - trimming

20250613

Diving
Coral aging code - trim QC

20250614

Nothing

20250615

hisat2 for coral aging

20250616

Airbrush training
Library prep
miRNA protein coding

20250617

Library prep
Assembly, lncRNA ID for Mcap age

20250618

Library prep
Code for coral aging

20250619

Library prep
Review manuscript + submit review

20250620

Philly

20250621

Philly

20250622

Philly

20250623

Lab meeting
Helping Zoe

20250624

Library prep
Downloaded smRNA Mcap data to Unity + QC
Responding to reviewers for e5 paper
Katie meeting

20250625

Zoe experiment
Responding to reviewers for e5 paper
lncRNA counts matrix

20250625

Zoe experiment
Responding to reviewers for e5 paper
Setting stuff up for AST spawning

to do

revise e5 manuscript + respond to reviewers
compile age lncRNA data - done
Decide on AST miRNA binding sites
e5 deep dive expression stuff ?
permit stuff
icrs session proposal

Written on June 1, 2025