July 2024 Goals
July 2024 goals and daily notebook entries.
Goals
Writing and manuscripts
- Dissertation proposal submission to grad school
- Complete Pacuta 2022 manuscript edits and send to co-authors
- Resubmission of Astrangia review - add new Astrangia paper to review
- e5 ncRNA results
- Write postdoc blurbs and send
Sample processing
- Re-amp 12 remaining miRNA Mcap 2023 samples
- Re-amp 6 WGBS e5 deep dive samples - order more enzymes
- Phys stuff for AST and Mcap DT ?
Data analysis
- 3’UTR for AST 2021 and rerun miRanda with that info
- Start Apul structural and functional annotation
- Catch up on e5 analysis
Field work / travel
- Flo experiment at BIOS
- Research diving course at BIOS (June 23 - July 13)
Will be taking a vacation in NJ with family from July 14-20.
Daily log
20240701
- RDM course
- Scaffolding assembly + QC
20240702
- RDM course
20240703
- RDM course
- Diploria spawned!!!!! Set up experiment
20240704
- RDM course
- Diploria experiment
20240705
- RDM course
- Diploria larval sampling
20240706
- Day off
20240707
- RDM course
20240708
- RDM course
20240709
- RDM course
- Helping Flo
20240710
- RDM course
20240711
- RDM course
20240712
- RDM course - last day!
20240713 - 20240721
- Off
20240722
- Agenda for Hollie meeting
- Catching up on emails
- Goseq and GO MWU for Pacuta 2022 paper
- CV edits
20240723
- GO MWU plotting and results
20240724
- Hollie meeting
- Re-amping 12 miRNA samples
- Talk w Zoe re pico
- Aquarium stuff
- Podcast recording
20240725
- BIOS testimonial
- Trinity meeting
- Writing
20240726
- Go mwu coding
- e5 meeting
- working on intro of e5 ncRNA paper
20240727
- Pacuta go mwu results writing
20240729
- Astrangia review writing
- e5 ncRNA intro
- Pacuta paper discussion writing
20240730
- Pacuta paper discussion writing
20240731
- Lab stuff
- e5 sample planning
- Lab meeting
July reflection
How did I do with my goals for this month?
Writing and manuscripts
- Dissertation proposal submission to grad school - need to do this lolololol.
- Complete Pacuta 2022 manuscript edits and send to co-authors - kinda? I redid the analyses with GO MWU and am rewriting discussion now
- Resubmission of Astrangia review - in the process of adding recently published papers
- e5 ncRNA results - sort of? miRNA and piRNA seem to be going well
- Write postdoc blurbs and send - nopeeeeee
Sample processing
- Re-amp 12 remaining miRNA Mcap 2023 samples - yes, success!
- Re-amp 6 WGBS e5 deep dive samples - order more enzymes - more enzyme arrived today
- Phys stuff for AST and Mcap DT - bope
Data analysis
- 3’UTR for AST 2021 and rerun miRanda with that info - nope
- Start Apul structural and functional annotation - Trinity and I met, she will be working on funannotate and I will be looking into methylation tools for pacbio reads
- Catch up on e5 analysis
Field work / travel
- Flo experiment at BIOS - done
- Research diving course at BIOS (June 23 - July 13) - done
Written on July 2, 2024