December 2024 Goals
December 2024 goals and daily notebook entries.
Goals
Writing and manuscripts
- e5 ncRNA complete draft of manuscript submit to biorxiv
- Pacuta manuscript submit to biorixiv
- Results for Mcap 2023
Sample processing
- Send WGBS e5 deep dive samples
- Process e5 timeseries samples for lipids + metabolites
Data analysis
- Rerun cutadapt for Mcap data
- Rerun mirdeep2 for Mcap
- Identify 3’UTRs for Mcap
- Run miranda with Mcap data
- Run mirtarrnaseq or mirDREM for Mcap data
- Work on SICB presentation
Field work / travel
- Book flights for sicb
- CBASS workshop!
Daily log
20241201
- Submitted TAR
- Minor edits to Pacuta paper
- Edits to e5 paper
- Processed 6 samples for lipid/metabolite - e5 timeseries
20241202
- Processed 12 samples for lipid/metabolite - e5 timeseries
- Lab meeting
- Pacuta fig and tables
20241203
- Adding updated fig and tables to Pacuta paper
- Rerunning cutadapt for smRNA Mcap data
- Edits to e5 paper
- BUSCO for Apul genome comparisons
- BUSCO fig making
- Zoe meeting
- Therapy
- Booked flights for sicb
20241204
- Processed 12 samples for lipid/metabolite - e5 timeseries
- Pacuta fig
- Packing
20241205
- Writing meeting
- Editing and formatting e5 paper
- Pacuta fig
- Writing for Apul genome paper
- Program of study
- Processed 6 samples for lipid/metabolite - e5 timeseries
- Packing
20241206
- Packing
- IMUGA form
- e5 meeting
- Mcap smRNA coding
20241207
- Mcap miRNA DE
- Travel
20241208
- Travel
20241209
- Travel & CBASS workshop
20241210
- CBASS workshop
- Looking at Astrangia reviews
20241211 - 20241217
- CBASS workshop
20241218
- Travel
20241219
- Travel recovery
- CBASS paper
20241220
- Travel recovery
- CBASS paper
20241224
- Mcap data analysis for sicb
20241228
- Mcap data analysis for sicb
20241229
- Mcap data analysis for sicb
20241230
- Mcap data analysis for sicb
- Presentation practice
20241231
- Edits to Pacuta paper
- Running flexbar for mcap smRNA data
How did I do on my goals for this month?
Writing and manuscripts
- e5 ncRNA complete draft of manuscript submit to biorxiv - nope, basically done though
- Pacuta manuscript submit to biorixiv - nope, very close to being done. Hollie has now done all of her edits
- Results for Mcap 2023 - no writing, just data analysis
Sample processing
- Send WGBS e5 deep dive samples - yes Zoe sent while I was away
- Process e5 timeseries samples for lipids + metabolites - yes, about halfway done
Data analysis
- Rerun cutadapt for Mcap data - yes
- Rerun mirdeep2 for Mcap - yes
- Identify 3’UTRs for Mcap -yes
- Run miranda with Mcap data - yes
- Run mirtarrnaseq or mirDREM for Mcap data - yes, mirtarrnaseq
- Work on SICB presentation - yes
Field work / travel
- Book flights for sicb - yes
- CBASS workshop! - yes!!!!! Super great workshop, very glad that I went
My Mcap data for sicb still doesn’t look amazing, but we are moving forward. The CBASS workshop was a wonderful experience, I am very glad that I went. Hopefully in 2025, I will have some more first author papers.
Written on December 1, 2024